linux下安装R

下载

版本：R3.2.2

下载地址：http://cran.rstudio.com/src/base/R-3/R-3.2.2.tar.gz

安装步骤：

解压 tar -zxvf R-3.2.2.tar.gz

./configure --prefix=/usr/local/R3.2.2

ERROR:

checking for cf77... no

checking for fort77... no

checking for fl32... no

checking for af77... no

checking for fc... no

configure: error: No F77 compiler found

solution:

[root@localhost Packages]# rpm -ivh gcc-gfortran-4.4.7-4.el6.x86_64.rpm libgfortran-4.4.7-4.el6.x86_64.rpm

warning: gcc-gfortran-4.4.7-4.el6.x86_64.rpm: Header V3 RSA/SHA256 Signature, key ID fd431d51: NOKEY

Preparing... ########################################### [100%]

 1:libgfortran ########################################### [ 50%]

 2:gcc-gfortran ########################################### [100%]

ERROR:

checking for main in -lncurses... no

checking for main in -ltermcap... no

checking for main in -ltermlib... no

checking for rl_callback_read_char in -lreadline... no

checking for history_truncate_file... no

configure: error: --with-readline=yes (default) and headers/libs are not available

SOLUTION:

[root@localhost Packages]# rpm -ivh readline-devel-6.0-4.el6.x86_64.rpm ncurses-devel-5.7-3.20090208.el6.x86_64.rpm

warning: readline-devel-6.0-4.el6.x86_64.rpm: Header V3 RSA/SHA256 Signature, key ID fd431d51: NOKEY

Preparing... ########################################### [100%]

 1:ncurses-devel ########################################### [ 50%]

 2:readline-devel ########################################### [100%]

ERROR:

checking whether iswctype exists and is declared... yes

checking for wctrans_t... yes

checking for mbstate_t... yes

checking for ICU... no

checking for X... no

configure: error: --with-x=yes (default) and X11 headers/libs are not available

SOLUTION:

[root@localhost Packages]# rpm -ivh libXt-devel-1.1.3-1.el6.x86_64.rpm xorg-x11-proto-devel-7.6-25.el6.noarch.rpm libX11-devel-1.5.0-4.el6.x86_64.rpm libxcb-devel-1.8.1-1.el6.x86_64

    .rpm libXau-devel-1.0.6-4.el6.x86_64.rpm libSM-devel-1.2.1-2.el6.x86_64.rpm libICE-devel-1.0.6-1.el6.x86_64.rpm

warning: libXt-devel-1.1.3-1.el6.x86_64.rpm: Header V3 RSA/SHA256 Signature, key ID fd431d51: NOKEY

Preparing... ########################################### [100%]

 1:xorg-x11-proto-devel ########################################### [ 14%]

 2:libICE-devel ########################################### [ 29%]

 3:libSM-devel ########################################### [ 43%]

 4:libXau-devel ########################################### [ 57%]

 5:libxcb-devel ########################################### [ 71%]

 6:libX11-devel ########################################### [ 86%]

 7:libXt-devel ########################################### [100%]

#在安装libXt-devel时，报以下依赖

pkgconfig(ice) is needed by libXt-devel-1.1.3-1.el6.x86_64    ==》libICE-devel

pkgconfig(sm) is needed by libXt-devel-1.1.3-1.el6.x86_64     ==》libSM-devel

pkgconfig(x11) is needed by libXt-devel-1.1.3-1.el6.x86_64    ==》libX11-devel、libxcb-devel、libXau-devel

pkgconfig(xproto) is needed by libXt-devel-1.1.3-1.el6.x86_64 ==》xorg-x11-proto-devel

ERROR:

error: C++ preprocessor “/lib/cpp” fails sanity

SOLUTION:

安装glibc-headers和gcc-c++的rpm包

make && make install

make[3]: Entering directory `/root/Desktop/R-3.2.2/src/modules/lapack'

make[3]: Leaving directory `/root/Desktop/R-3.2.2/src/modules/lapack'

make[3]: Entering directory `/root/Desktop/R-3.2.2/src/modules/X11'

make[3]: Leaving directory `/root/Desktop/R-3.2.2/src/modules/X11'

make[2]: Leaving directory `/root/Desktop/R-3.2.2/src/modules'

make[2]: Entering directory `/root/Desktop/R-3.2.2/src/library'

mkdir -p -- /usr/local/R3.2.2/lib64/R/library

installing packages ...

  building HTML index ...

make[2]: Leaving directory `/root/Desktop/R-3.2.2/src/library'

make[1]: Leaving directory `/root/Desktop/R-3.2.2/src'

make[1]: Entering directory `/root/Desktop/R-3.2.2/tests'

make[1]: Nothing to be done for `install'.

make[1]: Leaving directory `/root/Desktop/R-3.2.2/tests'

vim /etc/profile

export R_HOME=/usr/local/R3.2.2

export PATH=.:$PATH:$R_HOME/bin:$R_HOME

安装rstudio

[root@localhost ~]# wget http://download2.rstudio.org/rstudio-server-0.98.1091-x86_64.rpm

--2018-04-10 03:31:57--  http://download2.rstudio.org/rstudio-server-0.98.1091-x86_64.rpm

Resolving download2.rstudio.org... 54.192.212.48, 54.192.212.112, 54.192.212.214, ...

Connecting to download2.rstudio.org|54.192.212.48|:80... connected.

HTTP request sent, awaiting response... 200 OK

Length: 55476487 (53M) [application/x-redhat-package-manager]

Saving to: “rstudio-server-0.98.1091-x86_64.rpm”

100%[=====================================================================================================================================================>] 55,476,487  28.8K

    /s   in 23m 20s 

2018-04-10 03:55:18 (38.7 KB/s) - “rstudio-server-0.98.1091-x86_64.rpm” saved [55476487/55476487]

[root@localhost ~]# ll

total 68040

-rw-------.  1 root root     3310 Mar 10  2017 anaconda-ks.cfg

-rw-r--r--   1 root root      696 Jul 21  2017 derby.log

drwxr-xr-x.  5 root root     4096 Apr 10 03:20 Desktop

drwxr-xr-x.  2 root root     4096 Mar 10  2017 Documents

drwxr-xr-x.  2 root root     4096 Mar 10  2017 Downloads

-rw-r--r--   1 root root    14973 Jul 21  2017 hs_err_pid6312.log

-rw-r--r--.  1 root root    41955 Mar 10  2017 install.log

-rw-r--r--.  1 root root     9154 Mar 10  2017 install.log.syslog

drwxr-xr-x   5 root root     4096 Mar 21  2017 metastore_db

drwxr-xr-x.  2 root root     4096 Mar 10  2017 Music

drwxr-xr-x.  2 root root     4096 Mar 10  2017 Pictures

drwxr-xr-x.  2 root root     4096 Mar 10  2017 Public

drwxr-xr-x  22 root root     4096 Dec 14 01:00 python

-rw-r--r--   1 root root 14026384 Dec 13 22:58 Python-2.7.tgz

-rw-r--r--.  1 root root       65 Mar 11  2017 redhat-6.5_me_missing-rpms.lst

-rw-r--r--   1 root root 55476487 Nov  6  2014 rstudio-server-0.98.1091-x86_64.rpm

drwxr-xr-x   2 root root     4096 Jul 12  2017 spark-warehouse

drwxr-xr-x.  2 root root     4096 Mar 10  2017 Templates

-rw-r--r--   1 root root      849 Feb  6 23:11 testHive.py

drwxr-xr-x.  2 root root     4096 Mar 10  2017 Videos

-rw-r--r--   1 root root    18280 Aug 14  2017 zookeeper.out

[root@localhost ~]# rpm -ivh rstudio-server-0.98.1091-x86_64.rpm

Preparing...                ########################################### [100%]

   1:rstudio-server         ########################################### [100%]

groupadd: group 'rstudio-server' already exists

rsession: no process killed

rstudio-server start/running

ERROR:

[root@localhost ~]# rstudio-server start

/usr/lib/rstudio-server/bin/rserver: error while loading shared libraries: libssl.so.6: cannot open shared object file: No such file or directory

/usr/sbin/rstudio-server: line 24: return: can only return from a function or sourced script

initctl: Job is already running: rstudio-server

[root@localhost ~]# rstudio-server verify-installation

rstudio-server stop/waiting

/usr/lib/rstudio-server/bin/rserver: error while loading shared libraries: libssl.so.6: cannot open shared object file: No such file or directory

rstudio-server start/running

SOLUTION:

[root@localhost ~]# cd /usr/lib64

[root@localhost lib64]#  ll *ssl*

lrwxrwxrwx. 1 root root     27 Mar 11  2017 libnss_compat_ossl.so.0 -> libnss_compat_ossl.so.0.0.0

-rwxr-xr-x. 1 root root  81832 Mar 16  2010 libnss_compat_ossl.so.0.0.0

-rwxr-xr-x. 1 root root 249368 Oct 15  2013 libssl3.so

lrwxrwxrwx. 1 root root     16 Mar 10  2017 libssl.so.10 -> libssl.so.1.0.1e

-rwxr-xr-x. 1 root root 439912 Sep 27  2013 libssl.so.1.0.1e

openssl:

total 4

drwxr-xr-x. 2 root root 4096 Mar 10  2017 engines

[root@localhost lib64]# ln -s libssl.so.1.0.1e libssl.so.6

[root@localhost lib64]#  ll *ssl*

lrwxrwxrwx. 1 root root     27 Mar 11  2017 libnss_compat_ossl.so.0 -> libnss_compat_ossl.so.0.0.0

-rwxr-xr-x. 1 root root  81832 Mar 16  2010 libnss_compat_ossl.so.0.0.0

-rwxr-xr-x. 1 root root 249368 Oct 15  2013 libssl3.so

lrwxrwxrwx. 1 root root     16 Mar 10  2017 libssl.so.10 -> libssl.so.1.0.1e

-rwxr-xr-x. 1 root root 439912 Sep 27  2013 libssl.so.1.0.1e

lrwxrwxrwx  1 root root     16 Apr 10 18:26 libssl.so.6 -> libssl.so.1.0.1e

[root@localhost lib64]# ll *libcrypto*

lrwxrwxrwx  1 root root      19 Apr 10 18:30 libcrypto.so -> libcrypto.so.1.0.1e

lrwxrwxrwx. 1 root root      19 Mar 10  2017 libcrypto.so.10 -> libcrypto.so.1.0.1e

-rwxr-xr-x. 1 root root 1949440 Sep 27  2013 libcrypto.so.1.0.1e

[root@localhost lib64]# ln -s libcrypto.so.1.0.1e libcrypto.so.6

[root@localhost lib64]# ll *libcrypto*

lrwxrwxrwx  1 root root      19 Apr 10 18:30 libcrypto.so -> libcrypto.so.1.0.1e

lrwxrwxrwx. 1 root root      19 Mar 10  2017 libcrypto.so.10 -> libcrypto.so.1.0.1e

-rwxr-xr-x. 1 root root 1949440 Sep 27  2013 libcrypto.so.1.0.1e

lrwxrwxrwx  1 root root      19 Apr 10 18:34 libcrypto.so.6 -> libcrypto.so.1.0.1e

ERROR:

[root@localhost lib64]# rstudio-server start

initctl: Job is already running: rstudio-server

[root@localhost lib64]# rstudio-server verify-installation

rstudio-server stop/waiting

11 Apr 2018 01:35:45 [rserver] ERROR Unable to find libR.so in expected locations within R Home directory /usr/local/R3.2.2/lib64/R; LOGGED FROM: bool core::r_util::<unnamed

    >::detectRLocationsUsingR(const std::string&, core::FilePath*, core::FilePath*, core::config_utils::Variables*, std::string*) /root/rstudio/src/cpp/core/r_util/REnvironmentPosix

    .cpp:544

11 Apr 2018 01:35:45 [rserver] ERROR R shared library (/usr/local/R3.2.2/lib64/R/lib/libR.so) not found. If this is a custom build of R, was it built with the --enable-R-shlib option

    ?; LOGGED FROM: bool core::r_util::<unnamed>::validateREnvironment(const core::r_util::EnvironmentVars&, const core::FilePath&, std::string*) /root/rstudio/src/cpp/core/r_util

    /REnvironmentPosix.cpp:368

R shared library (/usr/local/R3.2.2/lib64/R/lib/libR.so) not found. If this is a custom build of R, was it built with the --enable-R-shlib option?

rstudio-server start/running, process 42212

SOLUTION:

[root@localhost Packages]# rpm -ivh openssl-1.0.1e-15.el6.x86_64.rpm

warning: openssl-1.0.1e-15.el6.x86_64.rpm: Header V3 RSA/SHA256 Signature, key ID fd431d51: NOKEY

Preparing...                ########################################### [100%]

    package openssl-1.0.1e-15.el6.x86_64 is already installed

[root@localhost Packages]# rpm -ivh openssl-devel-1.0.1e-15.el6.x86_64.rpm krb5-devel-1.10.3-10.el6_4.6.x86_64.rpm keyutils-libs-devel-1.4-4.el6.x86_64.rpm libcom_err-devel-1.41.12-18

    .el6.x86_64.rpm libselinux-devel-2.0.94-5.3.el6_4.1.x86_64.rpm libsepol-devel-2.0.41-4.el6.x86_64.rpm

warning: openssl-devel-1.0.1e-15.el6.x86_64.rpm: Header V3 RSA/SHA256 Signature, key ID fd431d51: NOKEY

Preparing...                ########################################### [100%]

   1:libsepol-devel         ########################################### [ 17%]

   2:libselinux-devel       ########################################### [ 33%]

   3:libcom_err-devel       ########################################### [ 50%]

   4:keyutils-libs-devel    ########################################### [ 67%]

   5:krb5-devel             ########################################### [ 83%]

   6:openssl-devel          ########################################### [100%]

ERROR:

ERROR Unable to find libR.so in expected locations within R Home directory

SOLUTION: 重新编译R

./configure --enable-R-shlib --prefix=/usr/local/R3.2.2

ERROR:

[root@localhost R-3.2.2]# rstudio-server verify-installation

11 Apr 2018 01:50:41 [rsession-rstudio-server] ERROR r error 4 (R code execution error) [errormsg=Error in tools:::httpdPort > 0L :

  comparison (6) is possible only for atomic and list types

]; OCCURRED AT: core::Error r::exec::<unnamed>::evaluateExpressionsUnsafe(SEXPREC*, SEXPREC*, SEXPREC**, r::sexp::Protect*) /root/rstudio/src/cpp/r/RExec.cpp:148; LOGGED FROM: core

    ::Error session::modules::help::initialize() /root/rstudio/src/cpp/session/modules/SessionHelp.cpp:892

rstudio-server start/running, process 80692

巴特西

linux下安装R

下载

安装步骤：

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